Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481633

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481633


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M106Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
2 ENSG00000136897 MRPL50 mitochondrial ribosomal protein L50 2.8074 0.0006
3 ENSG00000223786 novel transcript 2.8074 0.0006
4 ENSG00000231722 CHMP4AP1 CHMP4A pseudogene 1 2.8074 0.0006
5 ENSG00000221710 MIR1298 microRNA 1298 2.5850 0.0021
6 ENSG00000250842 novel transcript 2.5850 0.0021
7 ENSG00000230208 IFNNP1 interferon nu 1, pseudogene 2.5364 0.0000
8 ENSG00000252816 RNA5SP337 RNA, 5S ribosomal pseudogene 337 2.4037 0.0000
9 ENSG00000147003 CLTRN collectrin, amino acid transport regulator 2.3219 0.0001
10 ENSG00000200079 RNA5SP326 RNA, 5S ribosomal pseudogene 326 2.3219 0.0073

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000282732 novel pseudogene similar to part of zinc finger protein -1.7946 0.0000
63172 ENSG00000149806 FAU FAU ubiquitin like and ribosomal protein S30 fusion -1.7945 0.0000
63171 ENSG00000238961 SNORA47 small nucleolar RNA, H/ACA box 47 -1.7939 0.0000
63170 ENSG00000283122 HYMAI hydatidiform mole associated and imprinted -1.7937 0.0000
63169 ENSG00000151882 CCL28 C-C motif chemokine ligand 28 -1.7936 0.0000
63168 ENSG00000145741 BTF3 basic transcription factor 3 -1.7936 0.0000
63167 ENSG00000273768 RNVU1-29 RNA, variant U1 small nuclear 29 -1.7932 0.0000
63166 ENSG00000217128 FNIP1 folliculin interacting protein 1 -1.7931 0.0000
63165 ENSG00000235086 FNDC1-IT1 FNDC1 intronic transcript 1 -1.7931 0.0000
63164 ENSG00000168412 MTNR1A melatonin receptor 1A -1.7929 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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