Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481634

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481634


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M107Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237225 OR13K1P olfactory receptor family 13 subfamily K member 1 pseudogene 2.9037 0.0000
2 ENSG00000231557 novel transcript 2.6160 0.0000
3 ENSG00000243939 ribosomal protein L23 (RPL23) pseudogene 2.5850 0.0021
4 ENSG00000257272 novel transcript 2.5687 0.0000
5 ENSG00000249959 novel transcript 2.4534 0.0000
6 ENSG00000130385 BMP15 bone morphogenetic protein 15 2.3219 0.0072
7 ENSG00000150269 OR5M9 olfactory receptor family 5 subfamily M member 9 2.3219 0.0072
8 ENSG00000157181 ODR4 odr-4 GPCR localization factor homolog 2.3219 0.0072
9 ENSG00000226881 H3P44 H3 histone pseudogene 44 2.3219 0.0072
10 ENSG00000229578 LINC00358 long intergenic non-protein coding RNA 358 2.3219 0.0072

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000248514 novel transcript -1.7420 0.0000
63172 ENSG00000110104 CCDC86 coiled-coil domain containing 86 -1.7417 0.0000
63171 ENSG00000275155 novel transcript, sense intronic to ZNF423 -1.7402 0.0000
63170 ENSG00000165556 CDX2 caudal type homeobox 2 -1.7400 0.0000
63169 ENSG00000250007 novel transcript, antisense to ACTC1 -1.7399 0.0000
63168 ENSG00000270270 BNIP3P10 BCL2 interacting protein 3 pseudogene 10 -1.7397 0.0000
63167 ENSG00000272202 novel transcript, antisense to ARHGEF3 -1.7393 0.0000
63166 ENSG00000169955 ZNF747 zinc finger protein 747 -1.7392 0.0000
63165 ENSG00000164932 CTHRC1 collagen triple helix repeat containing 1 -1.7392 0.0000
63164 ENSG00000257803 PIGAP1 phosphatidylinositol glycan anchor biosynthesis class A pseudogene 1 -1.7390 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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