Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481635

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481635


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M108Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249418 frataxin (FXN) pseudogene 3.4534 0.0000
2 ENSG00000280098 TEC 2.8074 0.0000
3 ENSG00000212122 TSSK1B testis specific serine kinase 1B 2.6733 0.0000
4 ENSG00000279299 novel transcript 2.6610 0.0000
5 ENSG00000253424 novel transcript 2.5850 0.0034
6 ENSG00000264607 MIR3173 microRNA 3173 2.5850 0.0034
7 ENSG00000281708 ERC2-IT1 ERC2 intronic transcript 1 2.5850 0.0034
8 ENSG00000232633 novel transcript 2.5826 0.0000
9 ENSG00000213109 ribosomal protein L7a (RPL7A) pseudogene 2.5295 0.0000
10 ENSG00000199530 Y RNA 2.4387 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000185274 GALNT17 polypeptide N-acetylgalactosaminyltransferase 17 -1.8308 0.0000
63172 ENSG00000277493 novel zinc finger protein pseudogene -1.8306 0.0612
63171 ENSG00000279869 TEC -1.8305 0.0209
63170 ENSG00000272086 novel transcript -1.8302 0.0000
63169 ENSG00000138675 FGF5 fibroblast growth factor 5 -1.8301 0.0000
63168 ENSG00000246331 novel transcript -1.8298 0.0000
63167 ENSG00000096092 TMEM14A transmembrane protein 14A -1.8293 0.0000
63166 ENSG00000226241 zinc finger protein 770 (ZNF770) pseudogene -1.8286 0.0001
63165 ENSG00000119899 SLC17A5 solute carrier family 17 member 5 -1.8281 0.0000
63164 ENSG00000231864 novel transcript -1.8280 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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