Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481636

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481636


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M109Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000131263 RLIM ring finger protein, LIM domain interacting 2.5850 0.0000
2 ENSG00000243770 RN7SL65P RNA, 7SL, cytoplasmic 65, pseudogene 2.5850 0.0000
4 ENSG00000213452 AKR1B1P2 aldo-keto reductase family 1 member B1 pseudogene 2 2.3258 0.0000
5 ENSG00000207359 RNU6-925P RNA, U6 small nuclear 925, pseudogene 2.3219 0.0000
6 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 2.3219 0.0000
7 ENSG00000219404 neugrin, neurite outgrowth associated (NGRN) pseudogene 2.3219 0.0011
8 ENSG00000232341 RPL4P2 ribosomal protein L4 pseudogene 2 2.3219 0.0011
9 ENSG00000249780 pseudogene similar to part of mitochondrially encoded cytochrome c oxidase III (MT-CO3) 2.3219 0.0011
10 ENSG00000279479 novel transcript 2.3219 0.0000
63164 ENSG00000246596 SUMO interacting motifs containing 1 (SIMC1) pseudogene -1.5965 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000196666 FAM180B family with sequence similarity 180 member B -1.5986 0.0000
63172 ENSG00000284258 MIR8085 microRNA 8085 -1.5984 0.0000
63171 ENSG00000201966 RNA5-8SP4 RNA, 5.8S ribosomal pseudogene 4 -1.5984 0.0000
63170 ENSG00000176753 C15orf56 chromosome 15 open reading frame 56 -1.5981 0.0000
63169 ENSG00000217128 FNIP1 folliculin interacting protein 1 -1.5980 0.0000
63168 ENSG00000227258 SMIM2-AS1 SMIM2 antisense RNA 1 -1.5980 0.0000
63167 ENSG00000228195 RPL5P27 ribosomal protein L5 pseudogene 27 -1.5979 0.0000
63166 ENSG00000256029 novel protein -1.5977 0.0090
63165 ENSG00000164338 UTP15 UTP15 small subunit processome component -1.5971 0.0000
63164 ENSG00000246596 SUMO interacting motifs containing 1 (SIMC1) pseudogene -1.5965 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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