Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481637

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481637


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M110Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255148 novel transcript 3.1699 0.0000
2 ENSG00000265494 novel transcript 3.0425 0.0000
3 ENSG00000207583 MIR606 microRNA 606 3.0000 0.0001
4 ENSG00000217416 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 3.0000 0.0001
5 ENSG00000169306 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2.8074 0.0000
6 ENSG00000226383 LINC01876 long intergenic non-protein coding RNA 1876 2.8074 0.0002
7 ENSG00000253539 novel transcript 2.8074 0.0000
8 ENSG00000253912 ribosomal protein L18a (RPL18A) pseudogene 2.8074 0.0000
9 ENSG00000270779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (DDX4) pseudogene 2.8074 0.0000
10 ENSG00000252255 RNU2-35P RNA, U2 small nuclear 35, pseudogene 2.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000185130 H2BC13 H2B clustered histone 13 -1.8685 0.0000
63172 ENSG00000227538 HNRNPFP1 heterogeneous nuclear ribonucleoprotein F pseudogene 1 -1.8684 0.0000
63171 ENSG00000162989 KCNJ3 potassium inwardly rectifying channel subfamily J member 3 -1.8681 0.0000
63170 ENSG00000038295 TLL1 tolloid like 1 -1.8679 0.0000
63169 ENSG00000077147 TM9SF3 transmembrane 9 superfamily member 3 -1.8673 0.0000
63168 ENSG00000274895 novel transcript, antisense to PROX1 -1.8669 0.0000
63167 ENSG00000255408 PCDHA3 protocadherin alpha 3 -1.8666 0.0000
63166 ENSG00000264672 SEPTIN4-AS1 SEPTIN4 antisense RNA 1 -1.8660 0.0000
63165 ENSG00000167700 MFSD3 major facilitator superfamily domain containing 3 -1.8660 0.0000
63164 ENSG00000144290 SLC4A10 solute carrier family 4 member 10 -1.8655 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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