Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481638

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481638


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M111Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199487 Y RNA 3.4594 0.0000
2 ENSG00000261970 solute carrier family 19, member 3 (SLC19A3) pseudogene 3.3219 0.0000
3 ENSG00000196611 MMP1 matrix metallopeptidase 1 3.1699 0.0000
4 ENSG00000234840 LINC01239 long intergenic non-protein coding RNA 1239 3.1699 0.0000
5 ENSG00000249619 HMGN1P13 high mobility group nucleosome binding domain 1 pseudogene 13 3.0000 0.0001
6 ENSG00000251099 high-mobility group nucleosome binding domain 1 (HMGN1) pseudogene 3.0000 0.0001
7 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 3.0000 0.0001
8 ENSG00000250084 GAGE family member pseudogene 2.8264 0.0000
9 ENSG00000233690 EBAG9P1 EBAG9 pseudogene 1 2.8259 0.0000
10 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 2.8074 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000126804 ZBTB1 zinc finger and BTB domain containing 1 -2.0516 0.0000
63172 ENSG00000252947 SCARNA1 small Cajal body-specific RNA 1 -2.0510 0.0000
63171 ENSG00000167768 KRT1 keratin 1 -2.0506 0.0000
63170 ENSG00000180329 CCDC43 coiled-coil domain containing 43 -2.0502 0.0000
63169 ENSG00000224940 PRRT4 proline rich transmembrane protein 4 -2.0500 0.0000
63168 ENSG00000272205 novel transcript -2.0495 0.0000
63167 ENSG00000253682 novel transcript -2.0480 0.0038
63166 ENSG00000277437 NA -2.0475 0.0000
63165 ENSG00000180644 PRF1 perforin 1 -2.0464 0.0000
63164 ENSG00000227117 HORMAD2-AS1 HORMAD2 and MTMR3 antisense RNA 1 -2.0462 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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