Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481639

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481639


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M112Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232203 SLC25A6P2 solute carrier family 25 member 6 pseudogene 2 3.5850 0.0000
2 ENSG00000231877 novel transcript 3.4594 0.0000
3 ENSG00000241395 RN7SL344P RNA, 7SL, cytoplasmic 344, pseudogene 3.3219 0.0000
4 ENSG00000180919 OR56B4 olfactory receptor family 56 subfamily B member 4 3.1699 0.0000
5 ENSG00000187857 OR6C75 olfactory receptor family 6 subfamily C member 75 3.1699 0.0000
6 ENSG00000201665 RN7SKP6 RN7SK pseudogene 6 3.1699 0.0000
7 ENSG00000252815 RNU6-410P RNA, U6 small nuclear 410, pseudogene 3.1699 0.0000
8 ENSG00000219666 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (SUMO1) pseudogene 3.0304 0.0000
9 ENSG00000203859 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 3.0000 0.0000
10 ENSG00000204193 TXNDC8 thioredoxin domain containing 8 3.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000251424 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein -2.0000 0.1238
63172 ENSG00000250897 HMGB3P15 high mobility group box 3 pseudogene 15 -2.0000 0.5769
63171 ENSG00000250159 novel transcript -2.0000 0.0173
63170 ENSG00000249808 long intergenic non-protein coding RNA 1377 -2.0000 0.0111
63169 ENSG00000249359 novel transcript -2.0000 0.5769
63168 ENSG00000249000 novel transcript -2.0000 0.5769
63167 ENSG00000248799 novel transcript -2.0000 0.0001
63166 ENSG00000248148 novel transcript -2.0000 0.0456
63165 ENSG00000243861 novel transcript -2.0000 0.5769
63164 ENSG00000243761 ribosomal protein L32 (RPL32) pseudogene -2.0000 0.5769

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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