Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481640

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481640


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M113Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201140 RN7SKP128 RN7SK pseudogene 128 3.0000 0.0001
2 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
3 ENSG00000228209 PNPP1 PNP pseudogene 1 2.8074 0.0005
4 ENSG00000231688 RPL21P43 ribosomal protein L21 pseudogene 43 2.8074 0.0000
5 ENSG00000270924 novel IGHV pseudogene 2.8074 0.0005
6 ENSG00000236880 ribosomal protein (RPS26) pseudogene 2.6230 0.0000
7 ENSG00000046647 GEMIN8 gem nuclear organelle associated protein 8 2.5850 0.0018
8 ENSG00000235403 novel transcript 2.5850 0.0000
9 ENSG00000237478 pseudogene similar to part of ribosomal protein S11 (RPS11) 2.5850 0.0018
10 ENSG00000253334 novel transcript, antisense to SNX16 2.5850 0.0018

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000100842 EFS embryonal Fyn-associated substrate -1.8212 0.0000
63172 ENSG00000167799 NUDT8 nudix hydrolase 8 -1.8210 0.0000
63171 ENSG00000197601 FAR1 fatty acyl-CoA reductase 1 -1.8207 0.0000
63170 ENSG00000269897 COMMD3-BMI1 COMMD3-BMI1 readthrough -1.8201 0.0000
63169 ENSG00000148444 COMMD3 COMM domain containing 3 -1.8201 0.0000
63168 ENSG00000121297 TSHZ3 teashirt zinc finger homeobox 3 -1.8196 0.0000
63167 ENSG00000213540 TXN2P1 TXN2 pseudogene 1 -1.8183 0.0000
63166 ENSG00000185156 MFSD6L major facilitator superfamily domain containing 6 like -1.8179 0.0000
63165 ENSG00000136813 ECPAS Ecm29 proteasome adaptor and scaffold -1.8178 0.0000
63164 ENSG00000188662 H1-9P H1.9 linker histone, pseudogene -1.8175 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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