Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481641

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481641


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M114Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273010 novel transcript, antisense to LRIF1 3.1699 0.0000
2 ENSG00000231255 novel transcript 2.8074 0.0004
3 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.8074 0.0004
4 ENSG00000280185 tec 2.8074 0.0004
5 ENSG00000232039 DEFT1P2 defensin theta 1, pseudogene 2 2.7500 0.0000
6 ENSG00000173285 OR10K1 olfactory receptor family 10 subfamily K member 1 2.5850 0.0016
7 ENSG00000222202 RNU4-26P RNA, U4 small nuclear 26, pseudogene 2.5850 0.0016
8 ENSG00000249806 novel transcript 2.5850 0.0016
9 ENSG00000254352 chromosome 4 open reading frame 46 (C4orf46) pseudogene 2.5850 0.0000
10 ENSG00000280144 tec 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000227398 KIF9-AS1 KIF9 antisense RNA 1 -1.7354 0.0000
63172 ENSG00000264462 MIR3648-2 microRNA 3648-2 -1.7350 0.0000
63171 ENSG00000279685 MAPT-IT1 MAPT intronic transcript 1 -1.7347 0.0000
63170 ENSG00000273230 novel transcript -1.7339 0.0000
63169 ENSG00000160951 PTGER1 prostaglandin E receptor 1 -1.7336 0.0000
63168 ENSG00000124159 MATN4 matrilin 4 -1.7331 0.0000
63167 ENSG00000224421 ATP5MFP1 ATP synthase membrane subunit f pseudogene 1 -1.7330 0.0000
63166 ENSG00000065135 GNAI3 G protein subunit alpha i3 -1.7329 0.0000
63165 ENSG00000279875 TEC -1.7325 0.0000
63164 ENSG00000148680 HTR7 5-hydroxytryptamine receptor 7 -1.7324 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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