Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481642

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481642


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M115Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230942 HMGN1P5 high mobility group nucleosome binding domain 1 pseudogene 5 2.8074 0.0000
2 ENSG00000201196 Y RNA 2.5850 0.0006
3 ENSG00000222094 RNU2-65P RNA, U2 small nuclear 65, pseudogene 2.3219 0.0027
4 ENSG00000222617 RN7SKP254 RN7SK pseudogene 254 2.3219 0.0000
5 ENSG00000225514 MTND1P34 MT-ND1 pseudogene 34 2.3219 0.0027
6 ENSG00000227249 poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene 2.3219 0.0027
7 ENSG00000231900 GOT2P1 GOT2 pseudogene 1 2.3219 0.0027
8 ENSG00000234105 novel transcript 2.3219 0.0027
9 ENSG00000252990 RNU1-54P RNA, U1 small nuclear 54, pseudogene 2.3219 0.0027
10 ENSG00000254708 MMADHCP2 MMADHC pseudogene 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000238423 SNORD42B small nucleolar RNA, C/D box 42B -1.7260 0.0000
63172 ENSG00000260823 novel transcript -1.7259 0.0000
63171 ENSG00000267295 double C2-like domains, beta (DOC2B) pseudogene -1.7255 0.0000
63170 ENSG00000160606 TLCD1 TLC domain containing 1 -1.7251 0.0000
63169 ENSG00000247137 novel transcript -1.7250 0.0000
63168 ENSG00000225062 CATIP-AS1 CATIP antisense RNA 1 -1.7235 0.0000
63167 ENSG00000204851 PNMA8B PNMA family member 8B -1.7234 0.0000
63166 ENSG00000278193 CTAGE family, member 5 (CTAGE5) pseudogene -1.7233 0.3623
63165 ENSG00000263354 MIR5011 microRNA 5011 -1.7233 0.3623
63164 ENSG00000121853 GHSR growth hormone secretagogue receptor -1.7232 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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