Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481643

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481643


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M116Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199601 RNU6-562P RNA, U6 small nuclear 562, pseudogene 3.1699 0.0000
2 ENSG00000229661 BUD31P2 BUD31 homolog pseudogene 2 3.1699 0.0000
3 ENSG00000259457 novel transcript 3.0000 0.0001
4 ENSG00000280348 TEC 3.0000 0.0000
5 ENSG00000226847 PRPS1P1 phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 2.9908 0.0000
6 ENSG00000250905 novel transcript 2.8497 0.0000
7 ENSG00000271963 novel transcript, antisense to ZNF891 2.8333 0.0000
8 ENSG00000151418 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2.8074 0.0004
9 ENSG00000220091 LAP3P1 leucine aminopeptidase 3 pseudogene 1 2.8074 0.0004
10 ENSG00000249284 PC4 and SFRS1 interacting protein 1 (PSIP1) pseudogene 2.8074 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000236334 PPIAL4G peptidylprolyl isomerase A like 4G -2.0000 0.3529
63172 ENSG00000235450 novel transcript -2.0000 0.5690
63171 ENSG00000235300 uncharacterized LOC105371807 -2.0000 0.5690
63170 ENSG00000235215 novel transcript -2.0000 0.0008
63169 ENSG00000235133 RPL35AP22 ribosomal protein L35a pseudogene 22 -2.0000 0.5690
63168 ENSG00000234889 KPNB1P1 KPNB1 pseudogene 1 -2.0000 0.5690
63167 ENSG00000234785 EEF1GP5 eukaryotic translation elongation factor 1 gamma pseudogene 5 -2.0000 0.1247
63166 ENSG00000234512 TLR12P toll like receptor 12, pseudogene -2.0000 0.1247
63165 ENSG00000234141 novel transcript -2.0000 0.5690
63164 ENSG00000233211 GRPEL2P1 GRPEL2 pseudogene 1 -2.0000 0.3529

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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