Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481644

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481644


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M117Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000159884 CCDC107 coiled-coil domain containing 107 6.8633 0.0000
2 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 6.8633 0.0000
3 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease 6.8633 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 6.7197 0.0000
5 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 6.4718 0.0000
6 ENSG00000254846 novel transcript 6.4718 0.0000
7 ENSG00000259001 ribonuclease P RNA component H1 6.4718 0.0000
8 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.4718 0.0000
9 ENSG00000252919 Y RNA 5.9624 0.0000
10 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 5.5533 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000250222 novel transcript -1.5850 0.0058
63172 ENSG00000250205 YWHAEP4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4 -1.5850 0.0000
63171 ENSG00000250190 LINC02364 long intergenic non-protein coding RNA 2364 -1.5850 0.3040
63170 ENSG00000250186 novel transcript, antisense to PHB -1.5850 0.3040
63169 ENSG00000250115 AK3P2 adenylate kinase 3 pseudogene 2 -1.5850 0.5392
63168 ENSG00000249613 LINC02173 long intergenic non-protein coding RNA 2173 -1.5850 0.0941
63167 ENSG00000249547 novel transcript -1.5850 0.5392
63166 ENSG00000249484 LINC01470 long intergenic non-protein coding RNA 1470 -1.5850 0.3040
63165 ENSG00000249236 novel transcript -1.5850 0.5392
63164 ENSG00000249173 LINC01093 long intergenic non-protein coding RNA 1093 -1.5850 0.5392

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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