Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481645

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481645


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M118Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254846 novel transcript 6.6157 0.0000
2 ENSG00000259001 ribonuclease P RNA component H1 6.6157 0.0000
3 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.6157 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 6.5004 0.0000
5 ENSG00000252919 Y RNA 6.3923 0.0000
6 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 6.2808 0.0000
7 ENSG00000282885 novel transcript 5.6784 0.0000
8 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 5.6736 0.0000
9 ENSG00000159884 CCDC107 coiled-coil domain containing 107 4.8088 0.0000
10 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 4.8088 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230062 ANKRD66 ankyrin repeat domain 66 -1.5850 0.3048
63172 ENSG00000230015 novel transcript -1.5850 0.5284
63171 ENSG00000229980 TOB1-AS1 TOB1 antisense RNA 1 -1.5850 0.5284
63170 ENSG00000229649 LINC02681 long intergenic non-protein coding RNA 2681 -1.5850 0.0892
63169 ENSG00000229497 novel pseudogene similar to LOC203547 -1.5850 0.0170
63168 ENSG00000229360 PPP1R2P5 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 5 -1.5850 0.5284
63167 ENSG00000229243 LINC01981 long intergenic non-protein coding RNA 1981 -1.5850 0.0278
63166 ENSG00000229155 LINC02038 long intergenic non-protein coding RNA 2038 -1.5850 0.0892
63165 ENSG00000228957 pseudogene similar to part of ral guanine nucleotide dissociation stimulator RALGDS -1.5850 0.5284
63164 ENSG00000228949 UGT1A12P UDP glucuronosyltransferase family 1 member A12, pseudogene -1.5850 0.5284

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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