Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481646

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481646


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M119Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 6.5870 0.0000
2 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 6.3894 0.0000
3 ENSG00000254846 novel transcript 6.3894 0.0000
4 ENSG00000259001 ribonuclease P RNA component H1 6.3894 0.0000
5 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.3894 0.0000
6 ENSG00000159884 CCDC107 coiled-coil domain containing 107 5.9559 0.0000
7 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 5.9559 0.0000
8 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease 5.9559 0.0000
9 ENSG00000252919 Y RNA 5.8680 0.0000
10 ENSG00000282885 novel transcript 5.3631 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000244691 RPL10AP1 ribosomal protein L10a pseudogene 1 -1.5850 0.5295
63172 ENSG00000244681 MTHFD2P1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 -1.5850 0.5295
63171 ENSG00000244474 UGT1A4 UDP glucuronosyltransferase family 1 member A4 -1.5850 0.3045
63170 ENSG00000244399 RN7SL251P RNA, 7SL, cytoplasmic 251, pseudogene -1.5850 0.0010
63169 ENSG00000244329 UBA52P9 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 9 -1.5850 0.5295
63168 ENSG00000244267 RPL34P22 ribosomal protein L34 pseudogene 22 -1.5850 0.3045
63167 ENSG00000244253 RPS29P24 ribosomal protein S29 pseudogene 24 -1.5850 0.3045
63166 ENSG00000244235 ribosomal protein L17 (RPL17) pseudogene -1.5850 0.5295
63165 ENSG00000244198 ARHGEF35-AS1 ARHGEF35 antisense RNA 1 -1.5850 0.5295
63164 ENSG00000244066 RN7SL148P RNA, 7SL, cytoplasmic 148, pseudogene -1.5850 0.5295

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...