Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481647

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481647


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M120Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000115138 POMC proopiomelanocortin 2.3219 0.0005
2 ENSG00000167799 NUDT8 nudix hydrolase 8 2.3219 0.0000
3 ENSG00000199964 Y RNA 2.3219 0.0005
4 ENSG00000238705 MIR1976 microRNA 1976 2.0844 0.0000
5 ENSG00000165121 kinesin family member 27 (KIF27) pseudogene 2.0000 0.0000
6 ENSG00000176555 OR4S1 olfactory receptor family 4 subfamily S member 1 2.0000 0.0031
7 ENSG00000186377 CYP4X1 cytochrome P450 family 4 subfamily X member 1 2.0000 0.0031
8 ENSG00000205329 OR6C3 olfactory receptor family 6 subfamily C member 3 2.0000 0.0000
9 ENSG00000207717 MIR551B microRNA 551b 2.0000 0.0000
10 ENSG00000212589 NA 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000238627 RNA5SP489 RNA, 5S ribosomal pseudogene 489 -1.5850 1.0000
63172 ENSG00000238468 RNU7-14P RNA, U7 small nuclear 14 pseudogene -1.5850 0.2357
63171 ENSG00000238457 RNU7-169P RNA, U7 small nuclear 169 pseudogene -1.5850 1.0000
63170 ENSG00000238456 RNU6-1014P RNA, U6 small nuclear 1014, pseudogene -1.5850 1.0000
63169 ENSG00000238371 NA -1.5850 1.0000
63168 ENSG00000238370 RNU7-103P RNA, U7 small nuclear 103 pseudogene -1.5850 1.0000
63167 ENSG00000238365 RNU7-57P RNA, U7 small nuclear 57 pseudogene -1.5850 0.6129
63166 ENSG00000238003 RPL10P4 ribosomal protein L10 pseudogene 4 -1.5850 0.6022
63165 ENSG00000237931 CLIC4P3 chloride intracellular channel 4 pseudogene 3 -1.5850 1.0000
63164 ENSG00000237910 MTCO1P18 MT-CO1 pseudogene 18 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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