Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481648

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481648


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M121Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204257 HLA-DMA major histocompatibility complex, class II, DM alpha 2.5850 0.0001
2 ENSG00000223837 novel transcript 2.5850 0.0001
3 ENSG00000113328 CCNG1 cyclin G1 2.3219 0.0005
4 ENSG00000166111 SVOP SV2 related protein 2.3219 0.0005
5 ENSG00000222414 RNU2-59P RNA, U2 small nuclear 59, pseudogene 2.3219 0.0005
7 ENSG00000259632 UTP6, small subunit (SSU) processome component, homolog (yeast) (UTP6) pseudogene 2.3219 0.0000
8 ENSG00000277677 Metazoan signal recognition particle RNA 2.3219 0.0000
9 ENSG00000232591 LINC02642 long intergenic non-protein coding RNA 2642 2.1610 0.0000
10 ENSG00000009844 VTA1 vesicle trafficking 1 2.0000 0.0000
63164 ENSG00000252863 RNU6-1183P RNA, U6 small nuclear 1183, pseudogene -1.5850 0.6004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253668 novel pseudogene -1.5850 0.6004
63172 ENSG00000253374 novel transcript -1.5850 1.0000
63171 ENSG00000253334 novel transcript, antisense to SNX16 -1.5850 0.6004
63170 ENSG00000253295 novel transcript -1.5850 0.2501
63169 ENSG00000253205 novel transcript -1.5850 0.2501
63168 ENSG00000253028 NA -1.5850 1.0000
63167 ENSG00000252971 RNU6-1057P RNA, U6 small nuclear 1057, pseudogene -1.5850 1.0000
63166 ENSG00000252956 RNA5SP40 RNA, 5S ribosomal pseudogene 40 -1.5850 1.0000
63165 ENSG00000252931 RNU6-231P RNA, U6 small nuclear 231, pseudogene -1.5850 0.6158
63164 ENSG00000252863 RNU6-1183P RNA, U6 small nuclear 1183, pseudogene -1.5850 0.6004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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