Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481649

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481649


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M122Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000196352 CD55 CD55 molecule (Cromer blood group) 2.3219 0.0007
2 ENSG00000251234 PSMA2P2 proteasome subunit alpha 2 pseudogene 2 2.3219 0.0000
3 ENSG00000107021 TBC1D13 TBC1 domain family member 13 2.0000 0.0044
4 ENSG00000111877 MCM9 minichromosome maintenance 9 homologous recombination repair factor 2.0000 0.0000
5 ENSG00000125352 RNF113A ring finger protein 113A 2.0000 0.0044
6 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.0000 0.0044
7 ENSG00000183696 UPP1 uridine phosphorylase 1 2.0000 0.0044
8 ENSG00000197128 ZNF772 zinc finger protein 772 2.0000 0.0044
9 ENSG00000199577 RNU6-822P RNA, U6 small nuclear 822, pseudogene 2.0000 0.0044
10 ENSG00000201221 RNU4-40P RNA, U4 small nuclear 40, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000225616 ribosomal protein L27 (RPL27) pseudogene -1.5850 1.0000
63172 ENSG00000225508 SSXP5 SSX family pseudogene 5 -1.5850 0.5982
63171 ENSG00000225399 novel transcript -1.5850 0.3836
63170 ENSG00000225391 neuroblastoma highly expressed 1 -1.5850 1.0000
63169 ENSG00000225383 SFTA1P surfactant associated 1, lncRNA -1.5850 1.0000
63168 ENSG00000225378 novel transcript -1.5850 0.5982
63167 ENSG00000225285 LINC01770 long intergenic non-protein coding RNA 1770 -1.5850 0.0000
63166 ENSG00000225264 ZNRF2P2 zinc and ring finger 2 pseudogene 2 -1.5850 0.0003
63165 ENSG00000225216 novel transcript -1.5850 0.5982
63164 ENSG00000225173 novel transcript -1.5850 0.0590

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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