Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481651

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481651


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M124Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255347 zinc finger, CCHC domain containing 9 (ZCCHC9) pseudogene 3.0000 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.4155 0.0000
3 ENSG00000206807 RNU6-815P RNA, U6 small nuclear 815, pseudogene 2.3219 0.0029
4 ENSG00000222658 Y RNA 2.3219 0.0029
5 ENSG00000229668 pseudogene similar to part of small nuclear ribonucleoprotein polypeptide B (SNRPB2) 2.3219 0.0029
6 ENSG00000241879 KLF3P2 Kruppel like factor 3 pseudogene 2 2.3219 0.0029
7 ENSG00000250488 LINC02233 long intergenic non-protein coding RNA 2233 2.3219 0.0000
8 ENSG00000274317 LINC02334 long intergenic non-protein coding RNA 2334 2.3219 0.0029
9 ENSG00000275868 MIR8054 microRNA 8054 2.3219 0.0029
10 ENSG00000253072 NA 2.1610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000202502 RNA5SP151 RNA, 5S ribosomal pseudogene 151 -1.4588 0.0000
63172 ENSG00000163590 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L -1.4583 0.0000
63171 ENSG00000196387 ZNF140 zinc finger protein 140 -1.4578 0.0000
63170 ENSG00000201145 RNA5SP175 RNA, 5S ribosomal pseudogene 175 -1.4574 0.0000
63169 ENSG00000168876 ANKRD49 ankyrin repeat domain 49 -1.4571 0.0000
63168 ENSG00000120833 SOCS2 suppressor of cytokine signaling 2 -1.4570 0.0000
63167 ENSG00000182993 C12orf60 chromosome 12 open reading frame 60 -1.4569 0.0000
63166 ENSG00000196660 SLC30A10 solute carrier family 30 member 10 -1.4568 0.0000
63165 ENSG00000264462 MIR3648-2 microRNA 3648-2 -1.4561 0.0000
63164 ENSG00000229605 RPL21P93 ribosomal protein L21 pseudogene 93 -1.4559 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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