Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481653

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481653


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M126Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232924 ELOCP4 elongin C pseudogene 4 3.6610 0.0000
2 ENSG00000137440 FGFBP1 fibroblast growth factor binding protein 1 3.1699 0.0000
3 ENSG00000125352 RNF113A ring finger protein 113A 3.0000 0.0005
4 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 3.0000 0.0005
5 ENSG00000211578 MIR766 microRNA 766 3.0000 0.0005
6 ENSG00000274154 ribosomal protein S23 (RPS23) pseudogene 2.9037 0.0000
7 ENSG00000205100 HSP90AA4P heat shock protein 90 alpha family class A member 4, pseudogene 2.8862 0.0000
8 ENSG00000251821 RNU6-583P RNA, U6 small nuclear 583, pseudogene 2.8074 0.0000
9 ENSG00000267455 novel transcript, antisense GNAL 2.8074 0.0000
10 ENSG00000268267 SIGLEC29P sialic acid binding Ig like lectin 29, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000143321 HDGF heparin binding growth factor -2.0055 0.0000
63172 ENSG00000278514 novel transcript -2.0050 0.0000
63171 ENSG00000272556 GTF2IP13 general transcription factor IIi pseudogene 13 -2.0041 0.0000
63170 ENSG00000135045 C9orf40 chromosome 9 open reading frame 40 -2.0024 0.0000
63169 ENSG00000064300 NGFR nerve growth factor receptor -2.0024 0.0000
63168 ENSG00000163577 EIF5A2 eukaryotic translation initiation factor 5A2 -2.0023 0.0000
63167 ENSG00000278431 novel transcript, antisense to ANKRD34A -2.0021 0.0000
63166 ENSG00000153132 CLGN calmegin -2.0016 0.0000
63165 ENSG00000074590 NUAK1 NUAK family kinase 1 -2.0012 0.0000
63164 ENSG00000238086 PPP1R26P1 protein phosphatase 1 regulatory subunit 26 pseudogene 1 -2.0011 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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