Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481654

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481654


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M127Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249458 novel transcript 3.1699 0.0004
2 ENSG00000250263 LINC02509 long intergenic non-protein coding RNA 2509 3.1699 0.0004
3 ENSG00000237444 CTAGE family, member 4 (CTAGE4) pseudogene 3.0850 0.0000
4 ENSG00000127993 RBM48 RNA binding motif protein 48 3.0000 0.0012
5 ENSG00000226779 NAALADL2-AS2 NAALADL2 antisense RNA 2 3.0000 0.0000
6 ENSG00000258406 TUBBP3 tubulin beta pseudogene 3 3.0000 0.0000
7 ENSG00000261130 MPV17 mitochondrial inner membrane protein like 2.9061 0.0000
9 ENSG00000223466 LINC01825 long intergenic non-protein coding RNA 1825 2.7544 0.0000
10 ENSG00000234639 protein phosphatase 2, regulatory subunit B', gamma isoform (PPP2R5C) pseudogene 2.6459 0.0000
63164 ENSG00000267159 novel transcript, antisense to ARID3A -1.8778 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000020219 CCT8L1P chaperonin containing TCP1 subunit 8 like 1, pseudogene -1.8823 0.0000
63172 ENSG00000283921 MIR1302-9 microRNA 1302-9 -1.8822 0.0000
63171 ENSG00000181404 WASHC1 WASH complex subunit 1 -1.8822 0.0000
63170 ENSG00000178726 THBD thrombomodulin -1.8819 0.0000
63169 ENSG00000095596 CYP26A1 cytochrome P450 family 26 subfamily A member 1 -1.8809 0.0000
63168 ENSG00000253731 PCDHGA6 protocadherin gamma subfamily A, 6 -1.8799 0.0000
63167 ENSG00000236505 novel pseudogene -1.8790 0.0000
63166 ENSG00000225828 FAM229A family with sequence similarity 229 member A -1.8781 0.0000
63165 ENSG00000066279 ASPM assembly factor for spindle microtubules -1.8778 0.0000
63164 ENSG00000267159 novel transcript, antisense to ARID3A -1.8778 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...