Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481655

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481655


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M128Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231130 HLA-T major histocompatibility complex, class I, T (pseudogene) 3.1699 0.0002
2 ENSG00000225203 novel transcript 3.0000 0.0000
3 ENSG00000240271 ribosomal protein L29 (RPL29) pseudogene 3.0000 0.0005
4 ENSG00000259211 novel transcript, antisense to BAHD1 2.9195 0.0000
5 ENSG00000188694 KRTAP24-1 keratin associated protein 24-1 2.8074 0.0000
6 ENSG00000201901 RN7SKP48 RN7SK pseudogene 48 2.8074 0.0015
7 ENSG00000211590 MIR802 microRNA 802 2.8074 0.0000
8 ENSG00000218586 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.8074 0.0015
9 ENSG00000227161 novel transcript, sense overlapping BNIP2 and GTF2A2 2.8074 0.0000
10 ENSG00000255772 LINC01479 long intergenic non-protein coding RNA 1479 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000244066 RN7SL148P RNA, 7SL, cytoplasmic 148, pseudogene -2.0000 0.0000
63172 ENSG00000243150 novel transcript, antisense to RSRC1 -2.0000 0.0332
63171 ENSG00000242477 ribosomal protein L10a (RPL10A) pseudogene -2.0000 0.5557
63170 ENSG00000237220 novel transcript -2.0000 0.5557
63169 ENSG00000235963 MCCD1P1 mitochondrial coiled-coil domain 1 pseudogene 1 -2.0000 0.5557
63168 ENSG00000234467 SLC25A1P2 solute carrier family 25 member 1 pseudogene 2 -2.0000 0.0000
63167 ENSG00000234387 novel transcript -2.0000 0.0000
63166 ENSG00000234337 tropomyosin 1 (alpha) (TPM1) pseudogene -2.0000 0.5557
63165 ENSG00000232264 USP17L24 ubiquitin specific peptidase 17 like family member 24 -2.0000 0.1026
63164 ENSG00000232080 novel transcript -2.0000 0.5557

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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