Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481657

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481657


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M130Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207763 MIR617 microRNA 617 2.9183 0.0000
2 ENSG00000183891 TTC32 tetratricopeptide repeat domain 32 2.8074 0.0024
3 ENSG00000232385 RPS3AP25 RPS3A pseudogene 25 2.8074 0.0024
4 ENSG00000271070 GMCL1P2 GMCL1 pseudogene 2 2.8074 0.0000
5 ENSG00000271991 novel transcript 2.8074 0.0024
6 ENSG00000252707 RNU11-2P RNA, U11 small nuclear 2, pseudogene 2.6962 0.0000
7 ENSG00000206908 RNU1-136P RNA, U1 small nuclear 136, pseudogene 2.6739 0.0000
8 ENSG00000215274 GAGE10 G antigen 10 2.6499 0.0000
9 ENSG00000177186 OR2M7 olfactory receptor family 2 subfamily M member 7 2.5850 0.0065
10 ENSG00000223683 RPSAP65 ribosomal protein SA pseudogene 65 2.5850 0.0065

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000183741 CBX6 chromobox 6 -1.7498 0.0000
63172 ENSG00000255500 pantothenate kinase 3 (PANK3) pseudogene -1.7487 0.0001
63171 ENSG00000183072 NKX2-5 NK2 homeobox 5 -1.7479 0.0000
63170 ENSG00000279691 TEC -1.7468 0.0000
63169 ENSG00000248568 KRT8P48 keratin 8 pseudogene 48 -1.7463 0.0000
63168 ENSG00000252390 RNU5F-4P RNA, U5F small nuclear 4, pseudogene -1.7453 0.0000
63167 ENSG00000266446 novel transcript, sense intronic CDKN2B-AS1 -1.7450 0.0000
63166 ENSG00000203321 CARNMT1-AS1 CARNMT1 antisense RNA 1 -1.7438 0.0000
63165 ENSG00000153879 CEBPG CCAAT enhancer binding protein gamma -1.7431 0.0000
63164 ENSG00000205307 SAP25 Sin3A associated protein 25 -1.7427 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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