Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481658

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481658


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M131Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228941 UBE3AP2 ubiquitin protein ligase E3A pseudogene 2 3.0000 0.0000
2 ENSG00000236167 GAPDHP57 glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 2.8911 0.0000
3 ENSG00000207293 Y RNA 2.8333 0.0000
4 ENSG00000239344 ribosomal protein S6 (RPS6) pseudogene 2.8331 0.0000
5 ENSG00000270457 novel transcript 2.8271 0.0000
6 ENSG00000133742 CA1 carbonic anhydrase 1 2.8074 0.0023
7 ENSG00000164188 RANBP3L RAN binding protein 3 like 2.8074 0.0023
8 ENSG00000201752 RNU6-119P RNA, U6 small nuclear 119, pseudogene 2.8074 0.0023
9 ENSG00000255521 novel transcript 2.8074 0.0023
10 ENSG00000276564 novel transcript 2.8074 0.0023

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000145708 CRHBP corticotropin releasing hormone binding protein -1.8428 0.0000
63172 ENSG00000259515 novel transcript, antisense to CDC42BPB -1.8426 0.0000
63171 ENSG00000152484 USP12 ubiquitin specific peptidase 12 -1.8417 0.0000
63170 ENSG00000123739 PLA2G12A phospholipase A2 group XIIA -1.8415 0.0000
63169 ENSG00000214367 HAUS3 HAUS augmin like complex subunit 3 -1.8413 0.0000
63168 ENSG00000104472 CHRAC1 chromatin accessibility complex subunit 1 -1.8409 0.0000
63167 ENSG00000259112 NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough -1.8404 0.0000
63166 ENSG00000151366 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 -1.8404 0.0000
63165 ENSG00000273855 novel transcript, sense intronic to PLCB2 -1.8403 0.0000
63164 ENSG00000024048 UBR2 ubiquitin protein ligase E3 component n-recognin 2 -1.8403 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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