Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481659

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481659


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M132Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231822 SMC3P1 SMC3 pseudogene 1 3.1699 0.0002
2 ENSG00000253440 IGHV3-33-2 immunoglobulin heavy variable 3-33-2 (pseudogene) 2.8074 0.0018
3 ENSG00000280033 TEC 2.8074 0.0018
4 ENSG00000224626 novel transcript 2.7925 0.0000
5 ENSG00000258783 KRT18P6 keratin 18 pseudogene 6 2.6698 0.0000
6 ENSG00000172673 THEMIS thymocyte selection associated 2.5850 0.0000
7 ENSG00000202150 RNU6-407P RNA, U6 small nuclear 407, pseudogene 2.5850 0.0000
8 ENSG00000227717 golgin subfamily A member 6-like protein 22 2.5850 0.0000
9 ENSG00000251220 RFPL4AP3 ret finger protein like 4A pseudogene 3 2.5850 0.0051
10 ENSG00000252138 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000228485 GRK5-IT1 GRK5 intronic transcript 1 -1.8886 0.0000
63172 ENSG00000233867 SLC9B1P3 solute carrier family 9 member B1 pseudogene 3 -1.8883 0.0000
63171 ENSG00000197410 DCHS2 dachsous cadherin-related 2 -1.8880 0.0000
63170 ENSG00000171126 KCNG3 potassium voltage-gated channel modifier subfamily G member 3 -1.8865 0.0000
63169 ENSG00000174276 ZNHIT2 zinc finger HIT-type containing 2 -1.8861 0.0000
63168 ENSG00000239840 RPL23AP72 ribosomal protein L23a pseudogene 72 -1.8851 0.0000
63167 ENSG00000273514 FOXD4L6 forkhead box D4 like 6 -1.8850 0.0000
63166 ENSG00000160973 FOXH1 forkhead box H1 -1.8850 0.0000
63165 ENSG00000101057 MYBL2 MYB proto-oncogene like 2 -1.8845 0.0000
63164 ENSG00000260579 novel transcript, antisense to TM6SF1 -1.8835 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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