Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481661

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481661


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M134Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230030 novel transcript 3.8074 0.0000
2 ENSG00000125352 RNF113A ring finger protein 113A 3.5850 0.0000
3 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 3.5850 0.0000
4 ENSG00000250962 chromosome 12 open reading frame 29 (C12orf29) pseudogene 3.1699 0.0002
5 ENSG00000175018 TEX36 testis expressed 36 3.0491 0.0000
6 ENSG00000227181 LINC01688 long intergenic non-protein coding RNA 1688 3.0000 0.0000
7 ENSG00000264125 novel transcript, antisense to SLC6A4 3.0000 0.0006
8 ENSG00000257198 FAM205BP family with sequence similarity 205 member B, pseudogene 2.8859 0.0000
9 ENSG00000230982 DSTNP1 DSTN pseudogene 1 2.8327 0.0000
10 ENSG00000275773 novel transcript 2.8322 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000244464 novel transcript -2.0000 0.5560
63172 ENSG00000244153 WWP1P1 WW domain containing E3 ubiquitin protein ligase 1 pseudogene 1 -2.0000 0.5560
63171 ENSG00000242899 RPL7P16 ribosomal protein L7 pseudogene 16 -2.0000 0.5560
63170 ENSG00000240977 RN7SL283P RNA, 7SL, cytoplasmic 283, pseudogene -2.0000 0.5560
63169 ENSG00000240951 MTCO2P6 MT-CO2 pseudogene 6 -2.0000 0.5560
63168 ENSG00000239679 RN7SL193P RNA, 7SL, cytoplasmic 193, pseudogene -2.0000 0.5560
63167 ENSG00000238962 RNU7-176P RNA, U7 small nuclear 176 pseudogene -2.0000 0.0997
63166 ENSG00000236241 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (DDX5) pseudogene -2.0000 0.0113
63165 ENSG00000229707 SKP1P3 S-phase kinase associated protein 1 pseudogene 3 -2.0000 0.5560
63164 ENSG00000228612 HK2P1 hexokinase 2 pseudogene 1 -2.0000 0.5560

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...