Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481662

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481662


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M135Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223911 novel transcript 3.0566 0.0000
2 ENSG00000258034 novel transcript, antisense to MED13L 2.7518 0.0000
3 ENSG00000224711 LINC01706 long intergenic non-protein coding RNA 1706 2.6455 0.0000
4 ENSG00000229608 GOLGA2P4 GOLGA2 pseudogene 4 2.6451 0.0000
5 ENSG00000207628 MIR651 microRNA 651 2.6317 0.0000
6 ENSG00000279511 TEC 2.5850 0.0000
7 ENSG00000283532 MIR4317 microRNA 4317 2.5850 0.0061
8 ENSG00000250334 LINC00989 long intergenic non-protein coding RNA 989 2.5382 0.0000
9 ENSG00000207360 RNU6-14P RNA, U6 small nuclear 14, pseudogene 2.5018 0.0000
10 ENSG00000212276 RNA5SP292 RNA, 5S ribosomal pseudogene 292 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000119655 NPC2 NPC intracellular cholesterol transporter 2 -1.7854 0.0000
63172 ENSG00000143952 VPS54 VPS54 subunit of GARP complex -1.7853 0.0000
63171 ENSG00000234740 novel transcript -1.7853 0.0000
63170 ENSG00000107581 EIF3A eukaryotic translation initiation factor 3 subunit A -1.7847 0.0000
63169 ENSG00000224993 RPL29P12 ribosomal protein L29 pseudogene 12 -1.7841 0.0000
63168 ENSG00000204923 FBXO48 F-box protein 48 -1.7836 0.0000
63167 ENSG00000207119 Small nucleolar RNA U3 -1.7828 0.0000
63166 ENSG00000276006 REXO1L12P REXO1 like 12, pseudogene -1.7828 0.0000
63165 ENSG00000175809 CBLL2 Cbl proto-oncogene like 2 -1.7826 0.0000
63164 ENSG00000224934 novel transcript -1.7819 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...