Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481663

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481663


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M136Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230275 SERBP1P4 SERPINE1 mRNA binding protein 1 pseudogene 4 3.1699 0.0003
2 ENSG00000240519 ribosomal protein, large, P1 (RPLP1) pseudogene 3.1699 0.0003
3 ENSG00000251339 novel transcript 3.1699 0.0003
4 ENSG00000251412 novel transcript 3.1699 0.0000
6 ENSG00000217929 CICP18 capicua transcriptional repressor pseudogene 18 2.8844 0.0000
7 ENSG00000253861 SLC2A3P1 solute carrier family 2 member 3 pseudogene 1 2.8499 0.0000
8 ENSG00000222788 RNU2-38P RNA, U2 small nuclear 38, pseudogene 2.8074 0.0024
9 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.8074 0.0024
10 ENSG00000271901 novel transcript 2.8074 0.0024
63164 ENSG00000147050 KDM6A lysine demethylase 6A -1.9679 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259349 novel transcript, antisense to APPBP2 -1.9734 0.0000
63172 ENSG00000213433 RPLP1P6 ribosomal protein lateral stalk subunit P1 pseudogene 6 -1.9723 0.0000
63171 ENSG00000073008 PVR PVR cell adhesion molecule -1.9719 0.0000
63170 ENSG00000139842 CUL4A cullin 4A -1.9713 0.0000
63169 ENSG00000104951 IL4I1 interleukin 4 induced 1 -1.9712 0.0000
63168 ENSG00000093183 SEC22C SEC22 homolog C, vesicle trafficking protein -1.9706 0.0000
63167 ENSG00000199047 MIR378A microRNA 378a -1.9699 0.0000
63166 ENSG00000283634 MIR3155B microRNA 3155b -1.9679 0.0000
63165 ENSG00000263628 MIR3155A microRNA 3155a -1.9679 0.0000
63164 ENSG00000147050 KDM6A lysine demethylase 6A -1.9679 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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