Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481664

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481664


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M137Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251149 MTND5P5 MT-ND5 pseudogene 5 3.3219 0.0000
2 ENSG00000264089 MIR3681 microRNA 3681 3.3219 0.0001
3 ENSG00000178462 TUBAL3 tubulin alpha like 3 3.1699 0.0003
4 ENSG00000197953 AADACL2 arylacetamide deacetylase like 2 3.1699 0.0003
5 ENSG00000271588 LARP7P1 LARP7 pseudogene 1 3.1699 0.0003
6 ENSG00000200974 RNU4-87P RNA, U4 small nuclear 87, pseudogene 3.0000 0.0009
7 ENSG00000212428 Small nucleolar RNA SNORD115 3.0000 0.0009
8 ENSG00000230758 SNAP23P1 synaptosome associated protein 23 pseudogene 1 3.0000 0.0000
9 ENSG00000248311 novel transcript 3.0000 0.0000
10 ENSG00000258526 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253186 coiled-coil domain containing 144 (CCDC144) pseudogene -2.0337 0.0000
63172 ENSG00000125445 MRPS7 mitochondrial ribosomal protein S7 -2.0328 0.0000
63171 ENSG00000231442 LARP1BP1 LARP1B pseudogene 1 -2.0318 0.0000
63170 ENSG00000214435 AS3MT arsenite methyltransferase -2.0317 0.0000
63169 ENSG00000144815 NXPE3 neurexophilin and PC-esterase domain family member 3 -2.0305 0.0000
63167 ENSG00000266865 SMAD specific E3 ubiquitin protein ligase 2 (SMURF2) pseudogene -2.0296 0.0000
63166 ENSG00000119457 SLC46A2 solute carrier family 46 member 2 -2.0292 0.0000
63165 ENSG00000133740 E2F5 E2F transcription factor 5 -2.0285 0.0000
63164 ENSG00000224914 LINC00863 long intergenic non-protein coding RNA 863 -2.0284 0.0000
10 ENSG00000258526 novel transcript 3.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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