Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481665

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481665


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M138Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235976 H2BP8 H2B histone pseudogene 8 3.0000 0.0010
2 ENSG00000279162 tec 2.9260 0.0000
3 ENSG00000249112 novel transcript, antisense to ZNF608 2.8774 0.0000
4 ENSG00000227971 serine/arginine-rich splicing factor 10 (SRSF10) pseudogene 2.8074 0.0026
5 ENSG00000231589 novel transcript 2.8074 0.0026
6 ENSG00000243601 RPL12P24 ribosomal protein L12 pseudogene 24 2.8074 0.0026
7 ENSG00000256293 ATP6V1E1P3 ATPase H+ transporting V1 subunit E1 pseudogene 3 2.8074 0.0026
8 ENSG00000258657 novel transcript, antisense to GZMB 2.8074 0.0026
9 ENSG00000280229 TEC 2.8074 0.0000
10 ENSG00000168398 BDKRB2 bradykinin receptor B2 2.7768 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000279613 TEC -1.7854 0.0000
63172 ENSG00000012983 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -1.7852 0.0000
63171 ENSG00000278727 novel transcript -1.7850 0.0000
63170 ENSG00000272657 novel transcript -1.7850 0.0000
63169 ENSG00000198743 SLC5A3 solute carrier family 5 member 3 -1.7850 0.0000
63168 ENSG00000284299 novel protein -1.7839 0.0000
63167 ENSG00000178726 THBD thrombomodulin -1.7835 0.0000
63166 ENSG00000105281 SLC1A5 solute carrier family 1 member 5 -1.7831 0.0000
63165 ENSG00000246790 novel transcript, antisense to SORL1 -1.7825 0.0000
63164 ENSG00000249348 UGDH-AS1 UGDH antisense RNA 1 -1.7821 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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