Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481666

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481666


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M139Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000147697 GSDMC gasdermin C 3.2331 0.0000
2 ENSG00000231712 H3P5 H3 histone pseudogene 5 3.2168 0.0000
3 ENSG00000213158 GAPDHP36 glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 3.1699 0.0004
4 ENSG00000251917 RNU1-86P RNA, U1 small nuclear 86, pseudogene 3.1699 0.0004
5 ENSG00000253138 LINC00967 long intergenic non-protein coding RNA 967 3.1699 0.0004
6 ENSG00000280961 TTTY3B testis-specific transcript, Y-linked 3B 3.1699 0.0004
7 ENSG00000258215 tripartite motif containing 61 (TRIM61) pseudogene 3.0986 0.0000
8 ENSG00000279635 tec 3.0889 0.0000
9 ENSG00000165841 CYP2C19 cytochrome P450 family 2 subfamily C member 19 3.0000 0.0000
10 ENSG00000239703 RN7SL568P RNA, 7SL, cytoplasmic 568, pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000257551 HLX-AS1 HLX antisense RNA 1 -1.9876 0.0000
63172 ENSG00000135333 EPHA7 EPH receptor A7 -1.9874 0.0000
63171 ENSG00000224536 novel transcript -1.9865 0.0000
63170 ENSG00000284284 MIR4712 microRNA 4712 -1.9865 0.0000
63169 ENSG00000259715 novel transcript -1.9865 0.0000
63168 ENSG00000283704 NA -1.9865 0.0000
63167 ENSG00000233608 TWIST2 twist family bHLH transcription factor 2 -1.9854 0.0000
63166 ENSG00000152056 AP1S3 adaptor related protein complex 1 subunit sigma 3 -1.9850 0.0000
63165 ENSG00000204851 PNMA8B PNMA family member 8B -1.9845 0.0000
63164 ENSG00000164543 STK17A serine/threonine kinase 17a -1.9840 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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