Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481667

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481667


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M140Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000256484 novel transcript 2.9037 0.0000
2 ENSG00000179083 FAM133A family with sequence similarity 133 member A 2.8074 0.0019
3 ENSG00000186310 NAP1L3 nucleosome assembly protein 1 like 3 2.8074 0.0019
4 ENSG00000199986 RNU6-486P RNA, U6 small nuclear 486, pseudogene 2.8074 0.0019
5 ENSG00000258960 FTH1P13 ferritin heavy chain 1 pseudogene 13 2.8074 0.0019
6 ENSG00000226261 PIMREGP1 PIMREG pseudogene 1 2.7823 0.0000
7 ENSG00000272966 novel transcript 2.7823 0.0000
8 ENSG00000270318 IGHV3OR16-11 immunoglobulin heavy variable 3/OR16-11 (pseudogene) 2.6893 0.0000
9 ENSG00000241942 RPS20P20 ribosomal protein S20 pseudogene 20 2.6786 0.0000
10 ENSG00000207136 RNU6-769P RNA, U6 small nuclear 769, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000238082 NUDCP2 nuclear distribution C pseudogene 2 -1.7369 0.0000
63172 ENSG00000169594 BNC1 basonuclin 1 -1.7367 0.0000
63171 ENSG00000102763 VWA8 von Willebrand factor A domain containing 8 -1.7360 0.0000
63170 ENSG00000196776 CD47 CD47 molecule -1.7359 0.0000
63169 ENSG00000276874 novel transcript -1.7353 0.0000
63168 ENSG00000270181 BIVM-ERCC5 BIVM-ERCC5 readthrough -1.7351 0.0000
63167 ENSG00000231720 novel transcript -1.7351 0.0000
63166 ENSG00000281501 SEPSECS-AS1 SEPSECS antisense RNA 1 (head to head) -1.7350 0.0000
63164 ENSG00000260352 novel transcript, antisense to SMG1 -1.7349 0.0000
10 ENSG00000207136 RNU6-769P RNA, U6 small nuclear 769, pseudogene 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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