Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773514

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773514


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M141Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249193 HSPD1P5 heat shock protein family D (Hsp60) member 1 pseudogene 5 3.0000 0.0000
2 ENSG00000250544 LINC02059 long intergenic non-protein coding RNA 2059 2.5850 0.0004
3 ENSG00000224326 novel transcript 2.4863 0.0000
4 ENSG00000201474 RNU6-164P RNA, U6 small nuclear 164, pseudogene 2.3219 0.0020
5 ENSG00000250372 MARK2P4 microtubule affinity regulating kinase 2 pseudogene 4 2.3219 0.0020
6 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.3219 0.0000
7 ENSG00000254015 MTND4LP26 MT-ND4L pseudogene 26 2.3219 0.0000
8 ENSG00000257864 IQ motif containing F1 (IQCF1) pseudogene 2.1950 0.0000
9 ENSG00000252047 Y RNA 2.1016 0.0000
10 ENSG00000251852 Y RNA 2.0278 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000277246 novel transcript, sense intronic to TNFSF13B -1.5556 0.0002
63172 ENSG00000259601 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (DDX18) pseudogene -1.5556 0.0206
63171 ENSG00000226329 solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1) pseudogene -1.5556 0.0206
63170 ENSG00000226279 RPL12P10 ribosomal protein L12 pseudogene 10 -1.5556 0.0206
63169 ENSG00000156103 MMP16 matrix metallopeptidase 16 -1.5553 0.0000
63168 ENSG00000229301 novel transcript -1.5537 0.0000
63167 ENSG00000227923 TP53 target 3 (TP53TG3) pseudogene -1.5537 0.0000
63166 ENSG00000226587 novel transcript -1.5537 0.0000
63165 ENSG00000102683 SGCG sarcoglycan gamma -1.5537 0.0842
63164 ENSG00000227533 SLC2A1-AS1 SLC2A1 antisense RNA 1 -1.5531 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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