Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773516

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773516


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M143Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206847 Y RNA 3.0000 0.0000
2 ENSG00000259117 WD repeat and SOCS box containing 2 (WSB2) pseudogene 2.8074 0.0003
3 ENSG00000201228 Y RNA 2.5850 0.0010
4 ENSG00000256826 ATP5MFP4 ATP synthase membrane subunit f pseudogene 4 2.5850 0.0010
5 ENSG00000239435 KCNMB3P1 KCNMB3 pseudogene 1 2.4973 0.0000
6 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 2.4680 0.0000
7 ENSG00000155890 TRIM42 tripartite motif containing 42 2.3219 0.0000
8 ENSG00000225912 RPL26P36 ribosomal protein L26 pseudogene 36 2.3219 0.0000
9 ENSG00000238004 novel transcript 2.3219 0.0041
10 ENSG00000254705 novel transcript 2.3219 0.0041

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000265354 TIMM23 translocase of inner mitochondrial membrane 23 -1.5350 0.0000
63172 ENSG00000274740 NA -1.5344 0.0000
63171 ENSG00000162755 KLHDC9 kelch domain containing 9 -1.5331 0.0000
63170 ENSG00000206043 C18orf63 chromosome 18 open reading frame 63 -1.5328 0.0000
63169 ENSG00000236565 HNRNPA3P5 heterogeneous nuclear ribonucleoprotein A3 pseudogene 5 -1.5327 0.0010
63168 ENSG00000101751 POLI DNA polymerase iota -1.5322 0.0000
63167 ENSG00000255139 novel transcript -1.5319 0.0000
63166 ENSG00000174255 ZNF80 zinc finger protein 80 -1.5319 0.0000
63165 ENSG00000278057 TEX28 testis expressed 28 -1.5318 0.0041
63164 ENSG00000175175 PPM1E protein phosphatase, Mg2+/Mn2+ dependent 1E -1.5317 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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