Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773517

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773517


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M144Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222880 RN7SKP261 RN7SK pseudogene 261 2.5850 0.0000
2 ENSG00000270708 GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene 2.5850 0.0000
3 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 2.3821 0.0000
4 ENSG00000279780 novel transcript 2.3510 0.0000
5 ENSG00000279795 novel transcript 2.3510 0.0000
6 ENSG00000224059 HSPA8P16 heat shock protein family A (Hsp70) member 8 pseudogene 16 2.3219 0.0019
7 ENSG00000227418 PCGEM1 PCGEM1 prostate-specific transcript 2.3219 0.0019
8 ENSG00000233774 MED14P1 mediator complex subunit 14 pseudogene 1 2.3219 0.0000
9 ENSG00000249425 LINC02477 long intergenic non-protein coding RNA 2477 2.3219 0.0000
10 ENSG00000251951 RN7SKP34 RN7SK pseudogene 34 2.3219 0.0019

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000172320 OR5A1 olfactory receptor family 5 subfamily A member 1 -2.0000 0.3558
63172 ENSG00000090402 SI sucrase-isomaltase -2.0000 1.0000
63171 ENSG00000252367 Y RNA -2.0000 0.0000
63170 ENSG00000259177 novel transcript, antisense to IQGAP1 -1.9999 0.0000
63169 ENSG00000105509 HAS1 hyaluronan synthase 1 -1.9994 0.0000
63168 ENSG00000167476 JSRP1 junctional sarcoplasmic reticulum protein 1 -1.9993 0.0000
63167 ENSG00000231992 novel transcript -1.9991 0.0000
63166 ENSG00000233922 LINC01694 long intergenic non-protein coding RNA 1694 -1.9990 0.0000
63165 ENSG00000272533 SNORA28 small nucleolar RNA, H/ACA box 28 -1.9989 0.0000
63164 ENSG00000282728 PGR-AS1 PGR antisense RNA 1 -1.9989 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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