Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773518

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773518


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M145Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248639 UDP glucuronos...yltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene 3.4594 0.0000
4 ENSG00000280379 novel transcript 2.7429 0.0000
5 ENSG00000207957 MIR105-1 microRNA 105-1 2.6462 0.0000
6 ENSG00000211583 MIR767 microRNA 767 2.6462 0.0000
7 ENSG00000236861 BET1-AS1 BET1 antisense RNA 1 2.6455 0.0000
8 ENSG00000183909 OR4G2P olfactory receptor family 4 subfamily G member 2 pseudogene 2.6103 0.0000
9 ENSG00000248195 novel transcript 2.5850 0.0009
10 ENSG00000279530 TEC 2.5850 0.0009
63164 ENSG00000213820 RPL13P2 ribosomal protein L13 pseudogene 2 -2.2765 0.0000
63165 ENSG00000259283 novel transcript, antisense to IRX6 -2.2767 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270194 novel transcript, antisense to GOLGA4 -2.2788 0.0000
63172 ENSG00000267772 LINC01999 long intergenic non-protein coding RNA 1999 -2.2787 0.0000
63171 ENSG00000266943 RPSAP66 ribosomal protein SA pseudogene 66 -2.2787 0.0000
63170 ENSG00000254328 coiled-coil domain containing 72 (CCDC72) pseudogene -2.2786 0.0000
63169 ENSG00000225258 novel transcript -2.2781 0.0000
63168 ENSG00000264075 MIR4783 microRNA 4783 -2.2777 0.0000
63167 ENSG00000172572 PDE3A phosphodiesterase 3A -2.2777 0.0000
63166 ENSG00000104722 NEFM neurofilament medium -2.2775 0.0000
63165 ENSG00000259283 novel transcript, antisense to IRX6 -2.2767 0.0000
63164 ENSG00000213820 RPL13P2 ribosomal protein L13 pseudogene 2 -2.2765 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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