Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773519

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773519


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M146Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231841 FAM192BP family with sequence similarity 192 member B, pseudogene 3.1699 0.0000
2 ENSG00000278206 novel transcript 3.0542 0.0000
3 ENSG00000207653 MIR558 microRNA 558 2.8074 0.0000
4 ENSG00000232916 HMGN2P27 high mobility group nucleosomal binding domain 2 pseudogene 27 2.5850 0.0006
5 ENSG00000227240 novel transcript 2.5480 0.0000
6 ENSG00000251889 RNU4-49P RNA, U4 small nuclear 49, pseudogene 2.4183 0.0000
7 ENSG00000183395 PMCH pro-melanin concentrating hormone 2.4037 0.0000
8 ENSG00000256564 novel transcript 2.4037 0.0000
9 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 2.4037 0.0000
10 ENSG00000231926 SEPHS1P7 selenophosphate synthetase 1 pseudogene 7 2.3900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000207606 MIR554 microRNA 554 -2.2811 0.0000
63172 ENSG00000255239 TREHP1 trehalase pseudogene 1 -2.2811 0.0000
63171 ENSG00000169884 WNT10B Wnt family member 10B -2.2807 0.0000
63170 ENSG00000182103 FAM181B family with sequence similarity 181 member B -2.2801 0.0000
63169 ENSG00000230661 YY1P1 YY1 transcription factor pseudogene 1 -2.2797 0.0000
63168 ENSG00000163083 INHBB inhibin subunit beta B -2.2794 0.0000
63167 ENSG00000276457 FKBP4P8 FKBP prolyl isomerase 4 pseudogene 8 -2.2792 0.0004
63166 ENSG00000264575 LINC00526 long intergenic non-protein coding RNA 526 -2.2792 0.0000
63165 ENSG00000158955 WNT9B Wnt family member 9B -2.2792 0.0000
63164 ENSG00000279135 TEC -2.2790 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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