Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773520

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773520


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M147Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230556 pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) 2.5850 0.0000
2 ENSG00000242595 RPL26P26 ribosomal protein L26 pseudogene 26 2.5850 0.0004
4 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.5162 0.0000
5 ENSG00000257941 density-regulated protein (DENR) pseudogene 2.4905 0.0000
6 ENSG00000232242 ZYG11AP1 zyg-11 family member A, cell cycle regulator pseudogene 1 2.3628 0.0000
7 ENSG00000230292 NAALADL2-AS3 NAALADL2 antisense RNA 3 2.3219 0.0019
8 ENSG00000252083 NA 2.3219 0.0000
9 ENSG00000256499 LINC02468 long intergenic non-protein coding RNA 2468 2.3219 0.0019
10 ENSG00000264110 MIR4300 microRNA 4300 2.3219 0.0000
63164 ENSG00000253250 C8orf88 chromosome 8 open reading frame 88 -2.1465 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000132207 SLX1A SLX1 homolog A, structure-specific endonuclease subunit -2.1478 0.0000
63172 ENSG00000182004 SNRPE small nuclear ribonucleoprotein polypeptide E -2.1476 0.0000
63171 ENSG00000276384 novel transcript, antisense to TNFSF12 -2.1475 0.0000
63170 ENSG00000242540 novel transcript -2.1475 0.0000
63169 ENSG00000273729 novel transcript, antisense to IRF2BPL -2.1474 0.0000
63168 ENSG00000217801 protein tyrosine phosphatase family pseudogene -2.1471 0.0000
63167 ENSG00000274532 family with sequence similarity 208, member A (FAM208A) -2.1470 0.0000
63166 ENSG00000143126 CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 -2.1468 0.0000
63165 ENSG00000215788 TNFRSF25 TNF receptor superfamily member 25 -2.1466 0.0000
63164 ENSG00000253250 C8orf88 chromosome 8 open reading frame 88 -2.1465 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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