Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773521

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773521


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M148Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186925 KRTAP19-6 keratin associated protein 19-6 3.0000 0.0000
2 ENSG00000200796 RNU6-753P RNA, U6 small nuclear 753, pseudogene 2.8870 0.0000
3 ENSG00000253083 RNA5SP106 RNA, 5S ribosomal pseudogene 106 2.8074 0.0003
4 ENSG00000227805 RPL21P90 ribosomal protein L21 pseudogene 90 2.7903 0.0000
5 ENSG00000213335 CLNS1AP1 chloride nucleotide-sensitive channel 1A pseudogene 1 2.7320 0.0000
6 ENSG00000235859 proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5) pseudogene 2.6996 0.0000
7 ENSG00000242080 ribosomal protein L36a (RPL36A) pseudogene 2.6962 0.0000
8 ENSG00000207656 MIR489 microRNA 489 2.6455 0.0000
9 ENSG00000208014 MIR653 microRNA 653 2.6455 0.0000
10 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.6455 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000122691 TWIST1 twist family bHLH transcription factor 1 -2.2643 0.0000
63172 ENSG00000230237 GNA13P1 GNA13 pseudogene 1 -2.2642 0.0003
63171 ENSG00000207569 MIR433 microRNA 433 -2.2634 0.0000
63170 ENSG00000264127 SCML2P1 SCML2 pseudogene 1 -2.2629 0.0000
63169 ENSG00000275863 MIR7975 microRNA 7975 -2.2624 0.0000
63168 ENSG00000253944 novel transcript -2.2616 0.0000
63167 ENSG00000177272 KCNA3 potassium voltage-gated channel subfamily A member 3 -2.2612 0.0000
63166 ENSG00000243801 RN7SL461P RNA, 7SL, cytoplasmic 461, pseudogene -2.2612 0.0000
63165 ENSG00000200818 RNU6-1204P RNA, U6 small nuclear 1204, pseudogene -2.2612 0.0000
63164 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 -2.2609 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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