Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773522

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773522


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M149Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188993 LRRC66 leucine rich repeat containing 66 3.3219 0.0000
2 ENSG00000223786 novel transcript 3.3219 0.0000
3 ENSG00000241882 novel transcript 3.2516 0.0000
4 ENSG00000214121 PRDX1P1 peroxiredoxin 1 pseudogene 1 3.0000 0.0000
5 ENSG00000235133 RPL35AP22 ribosomal protein L35a pseudogene 22 3.0000 0.0000
6 ENSG00000283345 M-phase phosphoprotein 10 (MPHOSPH10) pseudogene 3.0000 0.0000
7 ENSG00000220091 LAP3P1 leucine aminopeptidase 3 pseudogene 1 2.9435 0.0000
8 ENSG00000251825 RN7SKP19 RN7SK pseudogene 19 2.9001 0.0000
9 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 2.8074 0.0000
10 ENSG00000259941 novel transcript 2.8074 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000260810 novel transcript -2.2786 0.0000
63172 ENSG00000175514 GPR152 G protein-coupled receptor 152 -2.2772 0.0000
63171 ENSG00000270252 IGKV3OR2-5 immunoglobulin kappa variable 3/OR2-5 (pseudogene) -2.2766 0.0000
63170 ENSG00000170745 KCNS3 potassium voltage-gated channel modifier subfamily S member 3 -2.2764 0.0000
63169 ENSG00000224136 splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene -2.2762 0.0000
63168 ENSG00000238230 LINC00391 long intergenic non-protein coding RNA 391 -2.2762 0.0000
63167 ENSG00000278915 novel transcript, antisense to PCDHA12 -2.2762 0.0000
63166 ENSG00000233875 novel transcript -2.2762 0.0000
63165 ENSG00000283745 MIR196B microRNA 196b -2.2761 0.0000
63164 ENSG00000185823 NPAP1 nuclear pore associated protein 1 -2.2761 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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