Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773523

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773523


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M150Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199202 RNA5SP289 RNA, 5S ribosomal pseudogene 289 2.6455 0.0000
2 ENSG00000270683 FAM71BP1 family with sequence similarity 71 member B pseudogene 1 2.5850 0.0002
3 ENSG00000200120 Y RNA 2.3219 0.0000
4 ENSG00000226253 MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 2.3219 0.0000
5 ENSG00000227016 LINC02796 long intergenic non-protein coding RNA 2796 2.3219 0.0013
6 ENSG00000242080 ribosomal protein L36a (RPL36A) pseudogene 2.3219 0.0013
7 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.3219 0.0013
8 ENSG00000264699 LINC01912 long intergenic non-protein coding RNA 1912 2.3219 0.0000
9 ENSG00000267146 novel transcript, antisense to WDR7 2.3219 0.0013
10 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.2788 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000101180 HRH3 histamine receptor H3 -2.0610 0.0000
63172 ENSG00000231095 GYG1P3 glycogenin 1 pseudogene 3 -2.0602 0.0000
63171 ENSG00000284216 MIR1909 microRNA 1909 -2.0593 0.0000
63170 ENSG00000227627 novel transcript -2.0592 0.0000
63169 ENSG00000182631 RXFP3 relaxin family peptide receptor 3 -2.0590 0.0000
63168 ENSG00000254827 SLC22A18AS solute carrier family 22 member 18 antisense -2.0589 0.0000
63167 ENSG00000283839 proline-rich protein 18-like -2.0587 0.0000
63166 ENSG00000185837 HDHD5-AS1 HDHD5 antisense RNA 1 -2.0586 0.0000
63165 ENSG00000138622 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 -2.0586 0.0000
63164 ENSG00000226124 FTCDNL1 formiminotransferase cyclodeaminase N-terminal like -2.0585 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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