Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773524

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773524


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M151Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199315 RNA5SP347 RNA, 5S ribosomal pseudogene 347 3.3219 0.0000
2 ENSG00000273994 SDR42E1P1 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 3.0000 0.0000
3 ENSG00000230030 novel transcript 2.8775 0.0000
4 ENSG00000166013 TRIM53BP tripartite motif containing 53B, pseudogene 2.8074 0.0000
5 ENSG00000218233 NEPNP nephrocan, pseudogene 2.8074 0.0000
6 ENSG00000229014 RPL30P13 ribosomal protein L30 pseudogene 13 2.8074 0.0000
7 ENSG00000250124 novel transcript 2.8074 0.0000
8 ENSG00000257683 LINC02463 long intergenic non-protein coding RNA 2463 2.6825 0.0000
9 ENSG00000219627 CYCSP17 CYCS pseudogene 17 2.5879 0.0000
10 ENSG00000199196 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000274373 novel transcript -2.4272 0.0000
63172 ENSG00000103260 METRN meteorin, glial cell differentiation regulator -2.4267 0.0000
63171 ENSG00000103253 HAGHL hydroxyacylglutathione hydrolase like -2.4263 0.0000
63170 ENSG00000213253 RPL12P42 ribosomal protein L12 pseudogene 42 -2.4259 0.0000
63169 ENSG00000235194 PPP1R3E protein phosphatase 1 regulatory subunit 3E -2.4256 0.0000
63168 ENSG00000246089 novel transcript -2.4250 0.0000
63167 ENSG00000198814 GK glycerol kinase -2.4249 0.0000
63166 ENSG00000213563 C8orf82 chromosome 8 open reading frame 82 -2.4248 0.0000
63165 ENSG00000224281 SLC25A5-AS1 SLC25A5 antisense RNA 1 -2.4245 0.0000
63164 ENSG00000257135 ODC1-DT ODC1 divergent transcript -2.4242 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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