Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773525

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773525


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M152Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233848 novel transcript 3.0000 0.0000
2 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 2.5850 0.0000
3 ENSG00000215054 HNRNPCP10 heterogeneous nuclear ribonucleoprotein C pseudogene 10 2.5850 0.0001
4 ENSG00000243758 RPL35AP15 ribosomal protein L35a pseudogene 15 2.5850 0.0001
5 ENSG00000279401 TEC 2.5850 0.0001
6 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.4812 0.0000
7 ENSG00000227138 pseudogene similar to part of ribosomal protein S3A RPS3A 2.3877 0.0000
8 ENSG00000199390 SNORD114-7 small nucleolar RNA, C/D box 114-7 2.3628 0.0000
9 ENSG00000199172 MIR331 microRNA 331 2.3219 0.0000
10 ENSG00000206752 RNU6-1323P RNA, U6 small nuclear 1323, pseudogene 2.3219 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000219940 SPTLC1P3 serine palmitoyltransferase long chain base subunit 1 pseudogene 3 -2.2692 0.0919
63172 ENSG00000227014 FKBP14-AS1 FKBP14 antisense RNA 1 -2.2691 0.1475
63171 ENSG00000280614 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -2.2690 0.0000
63170 ENSG00000267507 nuclear transport factor 2, pseudogene -2.2687 0.0000
63169 ENSG00000267390 novel transcript, antisense to KDSR -2.2681 0.0000
63168 ENSG00000198435 NRARP NOTCH regulated ankyrin repeat protein -2.2677 0.0000
63167 ENSG00000241527 CA15P1 CA15 pseudogene 1 -2.2676 0.0000
63166 ENSG00000178695 KCTD12 potassium channel tetramerization domain containing 12 -2.2676 0.0000
63165 ENSG00000240972 MIF macrophage migration inhibitory factor -2.2672 0.0000
63164 ENSG00000188263 IL17REL interleukin 17 receptor E like -2.2672 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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