Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773526

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773526


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M153Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233555 ribosomal protein L7a (RPL7A) pseudogene 3.0000 0.0000
2 ENSG00000212599 RNU6-279P RNA, U6 small nuclear 279, pseudogene 2.5850 0.0000
3 ENSG00000224490 TTC21B-AS1 TTC21B antisense RNA 1 2.3219 0.0014
4 ENSG00000225539 LINC01821 long intergenic non-protein coding RNA 1821 2.3219 0.0014
5 ENSG00000244099 RPS23P3 ribosomal protein S23 pseudogene 3 2.3219 0.0000
6 ENSG00000255486 tripartite motif-containing protein (TRIM) pseudogene 2.3219 0.0014
7 ENSG00000270835 CTAGE family, member 5 (CTAGE5) pseudogene 2.1727 0.0000
8 ENSG00000225418 AKR1C5P aldo-keto reductase family 1 member C5, pseudogene 2.1610 0.0000
9 ENSG00000214429 CYCSP6 CYCS pseudogene 6 2.0485 0.0000
10 ENSG00000259049 novel transcript, antisense to GNPNAT1 2.0014 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000179542 SLITRK4 SLIT and NTRK like family member 4 -2.0369 0.0000
63172 ENSG00000272321 novel transcript, antisense to STK3 -2.0367 0.0000
63171 ENSG00000196704 AMZ2 archaelysin family metallopeptidase 2 -2.0363 0.0000
63170 ENSG00000110422 HIPK3 homeodomain interacting protein kinase 3 -2.0360 0.0000
63169 ENSG00000116176 TPSG1 tryptase gamma 1 -2.0359 0.0000
63168 ENSG00000256982 novel transcript -2.0358 0.0000
63167 ENSG00000132825 PPP1R3D protein phosphatase 1 regulatory subunit 3D -2.0357 0.0000
63166 ENSG00000180530 NRIP1 nuclear receptor interacting protein 1 -2.0350 0.0000
63165 ENSG00000167700 MFSD3 major facilitator superfamily domain containing 3 -2.0348 0.0000
63164 ENSG00000262576 PCDHGA4 protocadherin gamma subfamily A, 4 -2.0347 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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