Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773527

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773527


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M154Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252369 RNU7-51P RNA, U7 small nuclear 51 pseudogene 3.0000 0.0000
2 ENSG00000223605 ninein (GSK3B interacting protein) (NIN) pseudogene 2.8074 0.0001
3 ENSG00000255459 ribosomal protein S24 pseudogene 2.8074 0.0001
4 ENSG00000200600 Y RNA 2.5850 0.0003
5 ENSG00000224012 pseudogene similar to part of tropomyosin 2 (beta) TPM2 2.5850 0.0000
6 ENSG00000229182 MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 2.5850 0.0003
7 ENSG00000244653 UBFD1P1 ubiquitin family domain containing 1 pseudogene 1 2.5850 0.0000
8 ENSG00000265861 MIR4495 microRNA 4495 2.5850 0.0003
10 ENSG00000251552 COQ10BP2 coenzyme Q10B pseudogene 2 2.3585 0.0000
63164 ENSG00000238082 NUDCP2 nuclear distribution C pseudogene 2 -1.8659 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259066 novel protein -1.8674 0.0000
63172 ENSG00000165186 PTCHD1 patched domain containing 1 -1.8673 0.0000
63171 ENSG00000178502 KLHL11 kelch like family member 11 -1.8670 0.0000
63170 ENSG00000188223 novel protein -1.8669 0.0000
63169 ENSG00000247746 USP51 ubiquitin specific peptidase 51 -1.8669 0.0000
63168 ENSG00000125817 CENPB centromere protein B -1.8667 0.0000
63167 ENSG00000221410 MIR1238 microRNA 1238 -1.8667 0.0000
63166 ENSG00000273012 novel transcript -1.8660 0.0000
63165 ENSG00000236394 novel transcript -1.8660 0.0000
63164 ENSG00000238082 NUDCP2 nuclear distribution C pseudogene 2 -1.8659 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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