Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773528

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773528


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M155Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214628 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 2.8074 0.0000
2 ENSG00000222459 RNA5SP293 RNA, 5S ribosomal pseudogene 293 2.5850 0.0000
3 ENSG00000235674 LDHAP2 lactate dehydrogenase A pseudogene 2 2.5850 0.0000
4 ENSG00000245711 NADK2-AS1 NADK2 antisense RNA 1 2.5850 0.0000
5 ENSG00000233444 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene 2.5020 0.0000
6 ENSG00000213542 ribosomal protein L7a (RPL7A) pseudogene 2.4534 0.0000
7 ENSG00000207994 MIR100 microRNA 100 2.4318 0.0000
8 ENSG00000177888 ZBTB41 zinc finger and BTB domain containing 41 2.3219 0.0021
9 ENSG00000231063 RPL6P6 ribosomal protein L6 pseudogene 6 2.3219 0.0000
10 ENSG00000233254 RPL21P134 ribosomal protein L21 pseudogene 134 2.3219 0.0021

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000257786 AKIRIN1P1 akirin 1 pseudogene 1 -2.0000 1.0000
63172 ENSG00000255551 novel pseudogene -2.0000 1.0000
63171 ENSG00000253283 solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 (SLC7A13) pseudogene -2.0000 0.0827
63170 ENSG00000250860 novel zinc finger protein pseudogene -2.0000 0.0527
63169 ENSG00000250665 novel transcript -2.0000 0.3531
63168 ENSG00000249951 novel transcript -2.0000 0.2196
63167 ENSG00000248873 SERBP1P6 SERPINE1 mRNA binding protein 1 pseudogene 6 -2.0000 0.0527
63166 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 -2.0000 1.0000
63165 ENSG00000236744 novel transcript -2.0000 0.3531
63164 ENSG00000233732 IGHV3OR16-10 immunoglobulin heavy variable 3/OR16-10 (non-functional) -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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