Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773529

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773529


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M156Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248893 FAM138E family with sequence similarity 138 member E 3.0000 0.0000
2 ENSG00000230031 POTEB2 POTE ankyrin domain family member B2 2.8074 0.0000
3 ENSG00000240012 SLC9A9-AS1 SLC9A9 antisense RNA 1 2.8074 0.0000
4 ENSG00000199204 Y RNA 2.5850 0.0002
5 ENSG00000201291 RNU1-34P RNA, U1 small nuclear 34, pseudogene 2.5850 0.0002
6 ENSG00000233805 pseudogene similar to part of pleckstrin homology, Sec7 and coiled-coil domains 1(cytohesin 1) (PSCD1) 2.5850 0.0002
7 ENSG00000249258 novel transcript 2.5411 0.0000
8 ENSG00000229338 NME2P3 NME2 pseudogene 3 2.4453 0.0000
9 ENSG00000224714 LINC02671 long intergenic non-protein coding RNA 2671 2.3900 0.0000
10 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.3560 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000219146 RPS4XP8 ribosomal protein S4X pseudogene 8 -2.0358 0.0002
63172 ENSG00000261444 MPV17 mitochondrial membrane protein-like (MPV17L) pseudogene -2.0347 0.0000
63171 ENSG00000157782 CABP1 calcium binding protein 1 -2.0345 0.0000
63170 ENSG00000271360 novel transcript, antisense to USP6NL -2.0343 0.0000
63169 ENSG00000242078 novel transcript -2.0342 0.0000
63168 ENSG00000283634 MIR3155B microRNA 3155b -2.0341 0.0000
63167 ENSG00000263628 MIR3155A microRNA 3155a -2.0341 0.0000
63166 ENSG00000258056 novel transcript, antisense to CD63 -2.0337 0.0000
63165 ENSG00000253054 RNU7-77P RNA, U7 small nuclear 77 pseudogene -2.0326 0.0000
63164 ENSG00000107833 NPM3 nucleophosmin/nucleoplasmin 3 -2.0325 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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