Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773530


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M157Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000173357 RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene 2.9037 0.0000
2 ENSG00000228207 testis specific protein, Y-linked 1 (TSPY1) pseudogene 2.9037 0.0000
3 ENSG00000258406 TUBBP3 tubulin beta pseudogene 3 2.9037 0.0000
4 ENSG00000229146 SNX18P4 sorting nexin 18 pseudogene 4 2.8074 0.0001
5 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 2.8074 0.0001
6 ENSG00000276257 novel pseudogene 2.8074 0.0001
7 ENSG00000199488 RNU1-70P RNA, U1 small nuclear 70, pseudogene 2.7348 0.0000
8 ENSG00000259849 VENTXP1 VENT homeobox pseudogene 1 2.7233 0.0000
9 ENSG00000243508 DNAJB6P7 DNAJB6 pseudogene 7 2.5966 0.0000
10 ENSG00000199204 Y RNA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000229994 RPL5P4 ribosomal protein L5 pseudogene 4 -2.0484 0.0000
63172 ENSG00000164621 SMAD5-AS1 SMAD5 antisense RNA 1 -2.0478 0.0000
63171 ENSG00000270012 novel transcript -2.0477 0.0000
63170 ENSG00000204227 RING1 ring finger protein 1 -2.0466 0.0000
63169 ENSG00000178966 RMI1 RecQ mediated genome instability 1 -2.0461 0.0000
63168 ENSG00000255239 TREHP1 trehalase pseudogene 1 -2.0456 0.0000
63167 ENSG00000172818 OVOL1 ovo like transcriptional repressor 1 -2.0452 0.0000
63166 ENSG00000264107 novel transcript, antisense to NF1 -2.0452 0.0000
63165 ENSG00000188070 C11orf95 chromosome 11 open reading frame 95 -2.0451 0.0000
63164 ENSG00000171522 PTGER4 prostaglandin E receptor 4 -2.0446 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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