Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773531

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773531


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M158Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248288 ribosomal protein L5 (RPL5) pseudogene 2.8219 0.0000
2 ENSG00000237877 LINC01473 long intergenic non-protein coding RNA 1473 2.8074 0.0000
3 ENSG00000221711 NA 2.7979 0.0000
4 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 2.6786 0.0000
5 ENSG00000207201 RNU1-148P RNA, U1 small nuclear 148, pseudogene 2.5850 0.0003
6 ENSG00000254754 novel transcript 2.5850 0.0003
7 ENSG00000256211 SKP1P2 S-phase kinase associated protein 1 pseudogene 2 2.5850 0.0003
8 ENSG00000260981 novel transcript 2.5850 0.0003
9 ENSG00000252704 RN7SKP277 RN7SK pseudogene 277 2.5646 0.0000
10 ENSG00000232159 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 2.5474 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000111885 MAN1A1 mannosidase alpha class 1A member 1 -2.2198 0.0000
63172 ENSG00000199461 Y RNA -2.2195 0.0000
63171 ENSG00000225100 DPY19L2P5 DPY19L2 pseudogene 5 -2.2191 0.0000
63170 ENSG00000183784 DOCK8-AS1 DOCK8 antisense RNA 1 -2.2190 0.0000
63169 ENSG00000255329 H2AZP4 H2A.Z histone pseudogene 4 -2.2190 0.0000
63168 ENSG00000248817 PMPCAP1 PMPCA pseudogene 1 -2.2182 0.0000
63167 ENSG00000267905 novel transcript, antisense to VSIG10L -2.2181 0.0000
63166 ENSG00000256678 chromosome 1 open reading frame 144 (C1orf144) pseudogene -2.2178 0.0000
63165 ENSG00000254402 LRRC24 leucine rich repeat containing 24 -2.2177 0.0000
63164 ENSG00000284160 MIR7706 microRNA 7706 -2.2176 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...