Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773532


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M159Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225972 MTND1P23 MT-ND1 pseudogene 23 2.8074 0.0000
2 ENSG00000244568 RN7SL654P RNA, 7SL, cytoplasmic 654, pseudogene 2.3850 0.0000
3 ENSG00000217268 TXNP7 thioredoxin pseudogene 7 2.3219 0.0000
4 ENSG00000236141 novel transcript 2.3219 0.0000
5 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 2.3219 0.0021
6 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.3219 0.0021
7 ENSG00000241566 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) 2.3219 0.0021
8 ENSG00000258044 novel transcript, antisense to PPP1R12A 2.3219 0.0021
9 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.3219 0.0000
10 ENSG00000279920 LINC01651 long intergenic non-protein coding RNA 1651 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272226 novel transcript -1.9719 0.0000
63172 ENSG00000199017 MIR1-1 microRNA 1-1 -1.9719 0.0000
63171 ENSG00000276609 NA -1.9717 0.0000
63170 ENSG00000278915 novel transcript, antisense to PCDHA12 -1.9715 0.0000
63169 ENSG00000251664 PCDHA12 protocadherin alpha 12 -1.9715 0.0000
63168 ENSG00000196972 SMIM10L2B small integral membrane protein 10 like 2B -1.9715 0.0000
63167 ENSG00000238057 ZEB2-AS1 ZEB2 antisense RNA 1 -1.9711 0.0000
63166 ENSG00000259551 novel transcript -1.9704 0.0001
63165 ENSG00000197627 UBE2Q2P12 ubiquitin conjugating enzyme E2 Q2 pseudogene 12 -1.9704 0.0001
63164 ENSG00000256256 novel transcript -1.9699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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