Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773533


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M160Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212461 NA 3.0850 0.0000
2 ENSG00000248423 clathrin, light chain (Lca) (CLTA) pseudogene 2.9886 0.0000
3 ENSG00000201775 RNU6-1325P RNA, U6 small nuclear 1325, pseudogene 2.8074 0.0000
4 ENSG00000253130 novel transcript 2.8074 0.0000
5 ENSG00000253343 novel transcript 2.8074 0.0000
6 ENSG00000253774 novel transcript 2.8074 0.0000
7 ENSG00000279190 novel transcript 2.8074 0.0002
8 ENSG00000258566 H1 histone family, member O, oocyte-specific (H1FOO) pseudogene 2.7500 0.0000
10 ENSG00000186523 FAM86B1 family with sequence similarity 86 member B1 2.5850 0.0000
63164 ENSG00000204969 PCDHA2 protocadherin alpha 2 -1.9912 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000278851 MIR6879 microRNA 6879 -1.9927 0.0000
63172 ENSG00000117586 TNFSF4 TNF superfamily member 4 -1.9924 0.0072
63171 ENSG00000268020 OR4G4P olfactory receptor family 4 subfamily G member 4 pseudogene -1.9924 0.0007
63170 ENSG00000157782 CABP1 calcium binding protein 1 -1.9924 0.0000
63169 ENSG00000272682 novel transcript -1.9917 0.0000
63168 ENSG00000242190 novel transcript -1.9916 0.0000
63167 ENSG00000163376 KBTBD8 kelch repeat and BTB domain containing 8 -1.9915 0.0000
63166 ENSG00000276484 phospholipase A2, group X (PLA2G10) pseudogene -1.9914 0.0001
63165 ENSG00000260823 novel transcript -1.9914 0.0000
63164 ENSG00000204969 PCDHA2 protocadherin alpha 2 -1.9912 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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